{ "_id": "6a1fea45b401979e7343e911", "Package": "PairViz", "Version": "1.3.8", "Date": "2026-02-16", "Authors@R": "c(person(given = c(\"Catherine\", \"B.\"),\nfamily = \"Hurley\",\nrole = \"aut\"),\nperson(given = \"R.W.\",\nfamily = \"Oldford\",\nrole = \"aut\"),\nperson(given = \"Catherine\",\nfamily = \"Hurley\",\nrole = \"cre\",\nemail = \"catherine.hurley@mu.ie\"))", "Maintainer": "Catherine Hurley ", "Title": "Visualization using Graph Traversal", "Description": "Improving graphics by ameliorating order effects, using\nEulerian tours and Hamiltonian decompositions of graphs.\nReferences for the methods presented here are C.B. Hurley and\nR.W. Oldford (2010) and C.B.\nHurley and R.W. Oldford (2011) .", "License": "GPL-2", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.3", "URL": "https://cbhurley.github.io/PairViz/", "Repository": "https://cbhurley.r-universe.dev", "Date/Publication": "2026-03-05 10:14:38 UTC", "RemoteUrl": "https://github.com/cbhurley/pairviz", "RemoteRef": "HEAD", "RemoteSha": "0e0d09a4bf487736a6768af0e8fac27a96466d80", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 08:43:28 UTC", "User": "root" }, "Author": "Catherine B. Hurley [aut],\nR.W. Oldford [aut],\nCatherine Hurley [cre]", "MD5sum": "921ad23cb195ae8a954ed649aa6f15de", "_user": "cbhurley", "_type": "src", "_file": "PairViz_1.3.8.tar.gz", "_fileid": "f70233e1422592f5f1ed2f58a9d7619ae1cecf4acee6c95f0243e549416728cb", "_filesize": 7218310, "_sha256": "f70233e1422592f5f1ed2f58a9d7619ae1cecf4acee6c95f0243e549416728cb", "_created": "2026-06-03T08:43:28.000Z", "_published": "2026-06-03T08:48:05.382Z", "_distro": "noble", "_jobs": [ { "job": 79255527761, "time": 148, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7379824160" }, { "job": 79255527752, "time": 152, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7379825724" }, { "job": 79255527823, "time": 110, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7379852291" }, { "job": 79255527772, "time": 111, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7379835968" }, { "job": 79254957171, "time": 199, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7379771641" }, { "job": 79255527749, "time": 124, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7379815449" }, { "job": 79255527722, "time": 93, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7379804861" }, { "job": 79255527753, "time": 101, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7379807605" }, { "job": 79255527765, "time": 104, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7379808385" } ], "_buildurl": "https://github.com/r-universe/cbhurley/actions/runs/26873587180", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cbhurley/pairviz", "_commit": { "id": "0e0d09a4bf487736a6768af0e8fac27a96466d80", "author": "cbhurley ", "committer": "cbhurley ", "message": "workflow\n", "time": 1772705678 }, "_maintainer": { "name": "Catherine Hurley", "email": "catherine.hurley@mu.ie", "login": "cbhurley", "description": "", "uuid": 36732566 }, "_registered": true, "_dependencies": [ { "package": "TSP", "role": "Depends" }, { "package": "gtools", "role": "Depends" }, { "package": "graph", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "Sleuth3", "role": "Suggests" }, { "package": "colorspace", "role": "Suggests" }, { "package": "multcomp", "role": "Suggests" }, { "package": "igraph", "role": "Suggests" }, { "package": "scales", "role": "Suggests" }, { "package": "RColorBrewer", "role": "Suggests" }, { "package": "alr4", "role": "Suggests" }, { "package": "scagnostics", "role": "Suggests" }, { "package": "gclus", "role": "Suggests" }, { "package": "irr", "role": "Suggests" }, { "package": "seriation", "role": "Suggests" } ], "_owner": "cbhurley", "_selfowned": true, "_usedby": 3, "_updates": [ { "week": "2026-10", "n": 2 } ], "_tags": [], "_stars": 1, "_contributors": [ { "user": "cbhurley", "count": 8, "uuid": 36732566 } ], "_userbio": { "uuid": 36732566, "type": "user", "name": "cbhurley" }, "_downloads": { "count": 335, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PairViz" }, "_devurl": "https://github.com/cbhurley/pairviz", "_pkgdown": "https://cbhurley.github.io/PairViz/", "_searchresults": 45, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/PairViz.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/cbhurley/pairviz", "_realowner": "cbhurley", "_cranurl": true, "_releases": [ { "version": "1.0", "date": "2008-10-28" }, { "version": "1.1", "date": "2010-08-31" }, { "version": "1.2", "date": "2010-09-16" }, { "version": "1.2.1", "date": "2011-12-09" }, { "version": "1.3.1", "date": "2018-07-24" }, { "version": "1.3.2", "date": "2018-08-09" }, { "version": "1.3.3", "date": "2019-12-20" }, { "version": "1.3.4", "date": "2020-10-05" }, { "version": "1.3.5", "date": "2022-01-12" }, { "version": "1.3.6", "date": "2022-08-12" }, { "version": "1.3.8", "date": "2026-02-18" } ], "_exports": [ "best_orientation", "bipartite_graph", "catpcp", "desaturate_color", "dist2edge", "dn_graph", "edge_index", "edge2dist", "eseq", "eseqa", "etour", "eulerian", "factor_spreadout", "find_path", "graph_compose", "graph_product", "graph_sum", "guided_pcp", "hpaths", "is_even_graph", "iterated_line_graph", "knn_graph", "kntour_add", "kntour_drop", "kspace_graph", "mc_plot", "mk_binary_graph", "mk_complete_graph", "mk_even_graph", "mk_hypercube_graph", "mk_line_graph", "nnodes", "order_best", "order_tsp", "overlayCI", "path_cis", "path_cor", "path_weights", "pcp", "permute_hpaths", "rater_spreadout", "table_plot", "weighted_hpaths", "zigzag" ], "_datasets": [ { "name": "cancer", "title": "Cancer Survival data", "object": "cancer", "file": "cancer.txt.gz", "class": [ "data.frame" ], "fields": [ "Survival", "Organ" ], "rows": 64, "table": true, "tojson": true } ], "_help": [ { "page": "best_orientation", "title": "Re-orients a path to be weight-decreasing", "topics": [ "best_orientation" ] }, { "page": "cancer", "title": "Cancer Survival data", "topics": [ "cancer" ] }, { "page": "desaturate_color", "title": "Desaturates colors", "topics": [ "desaturate_color" ] }, { "page": "eseq", "title": "Construct eulerian paths on the complete graph where nodes are integers 1..n.", "topics": [ "eseq", "eseqa", "kntour_add", "kntour_drop" ] }, { "page": "etour", "title": "Constructs eulerian tours on a graph.", "topics": [ "etour" ] }, { "page": "eulerian", "title": "~~ Methods for Function eulerian ~~", "topics": [ "eulerian", "eulerian,ANY-method", "eulerian,even_graph-method", "eulerian,graphNEL-method", "eulerian,matrix-method", "eulerian,numeric-method", "eulerian-methods" ] }, { "page": "even_graph", "title": "Class of graphs where all nodes have even degree", "topics": [ "even_graph-class", "graph_NEL-class", "is_even_graph", "is_even_graph,even_graph-method", "is_even_graph,graphNEL-method" ] }, { "page": "find_path", "title": "Constructs a path from a matrix of edge weights.", "topics": [ "find_path" ] }, { "page": "guided_pcp", "title": "Guided parallel coordinate plot.", "topics": [ "guided_pcp" ] }, { "page": "hpaths", "title": "Hamiltonian paths on the complete graph on 1..n, using Lucas-Walecki constructions.", "topics": [ "hpaths", "permute_hpaths", "zigzag" ] }, { "page": "specialg", "title": "Functions to construct graphs.", "topics": [ "bipartite_graph", "dn_graph", "graph_compose", "graph_product", "graph_sum", "iterated_line_graph", "knn_graph", "kspace_graph", "mk_binary_graph", "mk_hypercube_graph", "mk_line_graph" ] }, { "page": "mc_plot", "title": "Multiple comparison plot.", "topics": [ "mc_plot" ] }, { "page": "mk_complete_graph", "title": "Constructs a complete graph.", "topics": [ "mk_complete_graph" ] }, { "page": "mk_even_graph", "title": "Constructs an even graph", "topics": [ "mk_even_graph", "mk_even_graph,ANY-method", "mk_even_graph,even_graph-method", "mk_even_graph,graphNEL-method", "mk_even_graph,matrix-method", "mk_even_graph,numeric-method", "mk_even_graph-methods" ] }, { "page": "order_best", "title": "Uses brute-force enumeration to find the best hamiltonian on the complete graph on 1..n.", "topics": [ "order_best" ] }, { "page": "order_tsp", "title": "Uses tsp to find the best hamiltonian on the complete graph on 1..n", "topics": [ "order_tsp" ] }, { "page": "overlayci", "title": "Function to overlay confidence intervals on the current plot.", "topics": [ "overlayCI" ] }, { "page": "overview", "title": "Overview of PairViz package", "topics": [ "PairViz-package", "overview" ] }, { "page": "path_cor", "title": "Measures the tendency of edge weights to increase.", "topics": [ "path_cor" ] }, { "page": "pathweights", "title": "Utility functions to manipulate pairwise information.", "topics": [ "dist2edge", "edge2dist", "edge_index", "nnodes", "path_cis", "path_weights" ] }, { "page": "pcp", "title": "Enhanced parallel coordinate plots.", "topics": [ "catpcp", "pcp" ] }, { "page": "spreadout", "title": "Functions to prepare for categorical parallel coordinates, drawn by catpcp.", "topics": [ "factor_spreadout", "rater_spreadout" ] }, { "page": "tableplot", "title": "Plots rectangles on a grid", "topics": [ "table_plot" ] }, { "page": "whpaths", "title": "Constructs weight decreasing hamiltonian paths", "topics": [ "weighted_hpaths" ] } ], "_readme": "https://github.com/cbhurley/pairviz/raw/HEAD/README.md", "_rundeps": [ "BiocGenerics", "codetools", "foreach", "generics", "graph", "gtools", "iterators", "TSP" ], "_vignettes": [ { "source": "pcp.Rmd", "filename": "pcp.html", "title": "Correlation and scagnostic guided parallel coordinate plots", "author": "Catherine B. Hurley and R.W. Oldford", "engine": "knitr::rmarkdown", "headings": [ "Correlation guided plots of mtcars using Hamiltonians", "Scagnostic guided plots of sleep data using Hamiltonians", "Scagnostic guided plots of sleep data using Eulerians", "Focus on interesting plots" ], "created": "2020-10-04 16:44:50", "modified": "2020-10-04 16:44:50", "commits": 1 }, { "source": "PairVizIntroduction.Rmd", "filename": "PairVizIntroduction.html", "title": "Introduction to PairViz", "author": "Catherine B. Hurley and R.W. Oldford", "engine": "knitr::rmarkdown", "headings": [ "PairViz installation", "Graphs", "Traversing graph edges", "Edge traversal of a weighted graph", "Edge traversal of a complete graph", "Edge traversal of a complete graph via Hamiltonian decompositions", "Edge traversal of a weighted complete graph via hamiltonian decompositions", "Comparisions of edge traversals on an unweighted complete graph", "Comparisions of edge traversals on an weighted complete graph", "References" ], "created": "2020-10-04 16:44:50", "modified": "2026-03-05 10:12:06", "commits": 2 }, { "source": "MultipleComparisons.Rmd", "filename": "MultipleComparisons.html", "title": "Multiple comparisons with PairViz", "author": "Catherine B. Hurley and R.W. Oldford", "engine": "knitr::rmarkdown", "headings": [ "Cancer treatment groups", "Layout via graph structure", "Pairwise tests", "(Aside) Construction and display of the graph", "Visiting edges and nodes", "Multiple comparisons with Tukey's HSD", "Boxplots With Pairwise Testing: Vitamin C", "Subsets of comparisons: Mice Diets", "Boxplots With Pairwise Testing: Mice Diets" ], "created": "2020-10-04 16:44:50", "modified": "2022-01-11 19:12:26", "commits": 2 } ], "_score": 5.78354628227035, "_indexed": true, "_nocasepkg": "pairviz", "_universes": [ "cbhurley" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.3.8", "date": "2026-06-03T08:45:58.000Z", "distro": "noble", "commit": "0e0d09a4bf487736a6768af0e8fac27a96466d80", "fileid": "395aef6051ea8a09fb1bd5a5c12be9e99aff27f3570df9cba2f0316e4cf0c7f3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cbhurley/actions/runs/26873587180" }, { "r": "4.6.0", "os": "linux", "version": "1.3.8", "date": "2026-06-03T08:46:02.000Z", "distro": "noble", "commit": "0e0d09a4bf487736a6768af0e8fac27a96466d80", "fileid": "03b51bb82dce12ef8b51d58317b86e0b1954b90806343ccccc03c0e10b9e4e04", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cbhurley/actions/runs/26873587180" }, { "r": "4.5.3", "os": "mac", "version": "1.3.8", "date": "2026-06-03T08:47:17.000Z", "commit": "0e0d09a4bf487736a6768af0e8fac27a96466d80", "fileid": "72a3347dffa60966c4cffe7a77ba52275d8763b2e6c8f123293929741de770a6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cbhurley/actions/runs/26873587180" }, { "r": "4.6.0", "os": "mac", "version": "1.3.8", "date": "2026-06-03T08:46:33.000Z", "commit": "0e0d09a4bf487736a6768af0e8fac27a96466d80", "fileid": "ecd4846bcf783cfa8da76965e4b4873d3287ea3b30e61425475e367e971a3e08", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cbhurley/actions/runs/26873587180" }, { "r": "4.6.0", "os": "wasm", "version": "1.3.8", "date": "2026-06-03T08:45:55.000Z", "commit": "0e0d09a4bf487736a6768af0e8fac27a96466d80", "fileid": "90183a9d0586ed0a23537c2bf5aa7aa9c92df1f426b22c37a610ba0ec8cd7748", "status": "success", "buildurl": "https://github.com/r-universe/cbhurley/actions/runs/26873587180" }, { "r": "4.7.0", "os": "win", "version": "1.3.8", "date": "2026-06-03T08:44:52.000Z", "commit": "0e0d09a4bf487736a6768af0e8fac27a96466d80", "fileid": "3d2bfa6942986644e84342d12467944f108d36b7101cd1f0c69b42317e64d801", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cbhurley/actions/runs/26873587180" }, { "r": "4.5.3", "os": "win", "version": "1.3.8", "date": "2026-06-03T08:45:02.000Z", "commit": "0e0d09a4bf487736a6768af0e8fac27a96466d80", "fileid": "b327419f9d04c32b07c9e5023af695f061f65b0f91265fed276365fef088cebe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cbhurley/actions/runs/26873587180" }, { "r": "4.6.0", "os": "win", "version": "1.3.8", "date": "2026-06-03T08:45:04.000Z", "commit": "0e0d09a4bf487736a6768af0e8fac27a96466d80", "fileid": "aed5e7021f46feeada5cbf0e1a8801e4d6e23067473acd14df005e89e01c8322", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cbhurley/actions/runs/26873587180" } ] }